International Commission for the Taxonomy of Fungi (ICTF)
International Union of Microbiological Societies (IUMS, Mycology Division)
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Welcome to Trichoderma taxonomy!

Trichoderma:
 
16
Hypocrea:
 
6

ISTH POLL 2012: YOUR OPINION IS WANTED

Which generic name you prefer: Trichoderma or Hypocrea?

In brief: The ISTH as a subcommission of the International Commission on the Taxonomy of Fungi (ICTF), is expected to decide on the names in Hypocrea and Trichoderma.

Dear ISTH members,

among several changes a drastic change of the ICBN (International Code of Botanical Nomenclature) was adopted at the IBC in Melbourne in July 2011 for fungi: from 1 January 2013 only one official name will be allowed for each pleomorphic fungus.

The question of which name to use generally follows the principle of priority of publication, BUT

  • a new passage in Art. 57.2 says that an anamorph-typified name (e.g. Trichoderma) that has priority must not be taken up until retention of the teleomorph-typified name (e.g. Hypocrea) has been considered by the General Committee and rejected.
  • mass conservation: A new Art. 14.n says that lists of preferred names may be submitted to the General Committee, which will refer them to the Nomenclature Committee for Fungi and committees of experts for examination. After approval, these names will then become permanent, i.e. treated as conserved.

Currently some subcommittees for several groups of fungi are being formed, which are expected to provide draft lists of fungal names for examination and final conservation.

The ISTH as a subcommission of the International Commission on the Taxonomy of Fungi (ICTF), is expected to decide on the names in Hypocrea and Trichoderma.

Note that priority of names will have to be decided at both specific and generic levels.

As a first step it has to be decided, which generic name has to be used in future, Hypocrea OR Trichoderma.

To facilitate your decision, we provide the respective changes as an attachment and the following arguments for and against each generic name:

Hypocrea is the teleomorphic name. Iit is younger (1825) than Trichoderma, i.e. theoretically it has no priority of publication, but see above concerning Art. 57.

Arguments for the exclusive use of Hypocrea:

  • continuation of the well-practiced principle of naming the whole fungus with the teleomorph name;
  • an exclusive use of Hypocrea would necessitate fewer new combinations (ca. 90) than an exclusive use of Trichoderma (ca. 230);
  • over recent years Hypocrea has gained much acceptance, even for species that are important in industry, such as Hypocrea jecorina versus its anamorph Trichoderma reesei;
  • the diversity of species forming Hypocrea teleomorphs exceeds that of Trichoderma (species that had mainly been addressed as soil fungi). In fact, for isolates from soil much fewer species have been described.

Trichoderma is the anamorphic name. It is older (1794) than Hypocrea, i.e. basically it has priority of publication, but see above concerning Art. 57.

Further arguments for the exclusive use of Trichoderma:

  • a much higher number of citations in applied microbiology and biotechnology due to the wide use in economic applications and considerations;
  • frequent sampling from soil and other natural substrata;
  • exclusive result of isolation and most culture work;
  • higher degree in morphological variation in some groups of the genus.

Note the arguments against the exclusive use of Trichoderma:

  • It would disrupt the well-understood and well-applied use of teleomorph names for the holomorph.
  • An exclusive use of Trichoderma would necessitate more numerous new combinations (ca. 230) than an exclusive use of Hypocrea (ca. 90).
  • In addition to Hypocrea species that have been described recently and particularly those that do not form an anamorph, this would affect all older Hypocrea names/species that have not yet been re-studied by molecular methods.
  • Material from nature deposited in herbaria is nearly exclusively present as Hypocrea teleomorphs. Type material of Trichoderma spp. usually consists of dried agar cultures, whilst a re-examination always has to go back to the living state. If Trichoderma is adopted, old teleomorph names will soon be forgotten; it is also likely that many homonymous epithets will be introduced, as has been even done recently, e.g. Trichoderma amazonicum was established although there is already a Hypocrea amazonica, which has probably nothing to do with the new taxon. For that Hypocrea then a new epithet would have to be introduced in Trichoderma. This is just one of many problems that have to be resolved at the species level later on.

We hope that this is sufficient information to aid you in your decision. Please give us your opinion!

The outcome of this poll, which will be regarded as a democratic decision, will be reported to the ICTF and the NCF.

Walter Jaklitsch & Irina Druzhinina, assisted by Walter Gams

Take part in the Vote (registration required)!


ISTH.info - a website of Trichoderma DNA BarCode

Welcome to ISTH.info, the official website of the International Subcommission on Trichoderma and Hypocrea Taxonomy!ISTH is a Subcommission of the International Commission for the Taxonomy of Fungi (ICTF), a Commission of the Mycology Division of the International Union of Microbiological Societies ( IUMS Mycology Division).

This website is designed as an open platform to gather the most recent expert knowledge on Hypocrea/Trichoderma taxonomy and evolution. We also aim to present a collection of easy tools for quick molecular identification of  Hypocrea/Trichoderma based on DNA BarCode.

direct link to PCR protocols for amplification of Trichoderma phylogenetic markers.

 

 

 

 

NEW

extensive Hypocrea study published  open access

In this Hypocrea survay new 56 hyaline-spored species are described and illustrated in detail, including strain cultures and anamorphs. This work includes 16 new holomorphs, two new teleomorphs and nine anamorphs of species previously described as teleomorphs.

In the previous study of  W. Jaklitsch 19 species of Hypocrea with green ascospores are morphologicaly and phylogeneticaly examined and described, including six new teleomorph and five new anamorph species.

 

11th European Conference On Fungal Genetics

11th European Conference On Fungal Genetics

Nature Reviews Microbiology 9, 749-759 (October 2011)

Trichoderma: the genomics of opportunistic success

I.S. Druzhinina, V. Seidl-Seiboth, A. Herrera-Estrella, B.A. Horwitz, C.M. Kenerley, E. Monte, P. K. Mukherjee, S. Zeilinger, I.V. Grigoriev & C.P. Kubicek

Microbiology special issue on Trichoderma

special issue

Trichoderma – from Basic Biology to Biotechnology

 

Microbiology published a special issue in January 2012 in which most of the papers focus on Trichoderma.

This issue includes invited reviews and original research manuscripts addressing all aspects from genomics and the molecular basis for mechanisms of mycoparasitism and interactions with plants, to physiology relevant to the biocontrol potential of these fungi.

Table of content

                                                                                                                                                                                                              

HOW TO IDENTIFY TRICHODERMA IN A NUT SHELL

Steps suggested for researchers who are studying Hypocrea/Trichoderma biodiversity or performing a global screening for industrially important Trichoderma strains.
1) Prepare monospore (single spore) cultures for every strain to be identified. 

This step is of crucial importance since several Trichoderma spp. may occupy one ecological niche. Moreover, it is well known that due to homoplasy of morphological characters it is often impossible to discriminate species.

2) Extract genomic DNA from young cultures preferably before sporulation begins

We suggest to cultivate Trichoderma strains on agar plates covered by cellophane no longer than 2 - 4 days in order to control possible cross contamination by other Trichoderma cultures.

It is also advisable to check DNA quality on agarose gels. If possible, measure DNA concentration

3) make PCR amplification and sequencing of the following marker(s):

Click here for more details

TrichOKEY 2: The Molecular Barcode Program

Number of Hypocrea/Trichoderma species: 153
Number of ITS1 and 2 BarCodes: 151 Biodiversity profile
1. Name the query set of sequences Why it is important to give name to the sequence query :
2. Paste ITS1 and 2 sequence(s) in FASTA or text format Formats supported by TrichOKEY :
3. Select mode Display modes of TrichOKEY results : Full Short Fasta
biodiversity | ITS1 and 2 master alignment | disclimer | Help
Announcements
PCR Protocols    [2012-01-19]
Usefull: direct link to the PCR protocols from now on also on the first page ...
Welcome to the new version of the ISTH.info!    [2008-02-08]
Dear ISTH.info users, ...
 DNA BARCODE: Trichoderma identification tools

TrichOKEY:  

Here we presented TrichOKEY v. 2, a DNA oligonucliotide BarCode program for the identification of multiple sequences of Hypocrea and Trichoderma based on diagnostic hallmarks detected within ITS1 and 2 (internal transcribed spacers 1 and 2 of the rRNA gene cluster).

The current version contains newly integrated modules to increase the reliability of the result, which are powered by simultaneous identification of multiple sequences, complementary similarity search tool and has an advanced graphic interface.

Read more in Druzhinina et al., 2005

TrichoBLAST:

TrichoBLAST is a publicly available database supported by sequence diagnosis and the similarity search tools, which covers all genetically characterized species of the genus and contains almost complete sets of five of the most frequently used phylogenetic markers: ITS 1 and 2; two introns (tef1_int4(large), tef1_int5-short) and one exon tef1_exon6(large) of the gene encoding translation elongation factor 1-alpha; and a portion of the exon between the 5th and 7th eukaryotic conserved amino acid motives of subunit 2 of the RNA polymerase  gene (rpb2_exon).

Latest Species
Trichoderma theobromicola Trichoderma, Pachybasium "A" or Hamatum
Hypocrea crystalligena Hypocreamun, Megalocitrina
Trichoderma pleurotum Pachybasium, Harzianum
Hypocrea viridescens/Trichoderma viridescens Trichoderma, Viride
Hypocrea sp. WJ 2608 Pachybasium, Harzianum
Hypocrea sp. WJ 2701 Pachybasium, Harzianum
Trichoderma sp. MA 3642 Longibrahiatum, Longibrachiatum

Copyright: Irina Druzhinina & Alexey Kopchinskiy 2004 - 2008